saving duel screen window positions

I got a second monitor and really like flying with it. My big monitor is above and behind my smaller monitor. I use the big one for the outside view and the little one for my instrument panel I move the primary pannel down as well as the radio stack and some other subpannels.

My problem is when I save the flight, all the panels I move to the bottom monitor are up on top again but retain their spacing as if they were on the bottom. What am I doing wrong?

Thanks