The command bars are where you place(fly) the aircraft symbol of the attitude indicator in order to hand fly the aircraft via inputs from the flight director system. The flight directors commands come from how you've set the autopilot system, vertical speed, altitude, nav, approach mode. The signals are the same as what it sends to the autopilot except the autopilot is not on. It helps the pilot fly more accurately than just hand flying without any guidance at all(raw data). When you fly raw data, you have to judge when to lead a turn on to a VOR radial, how much pitch is required to maintain a certain vertical speed and you have to manually maintain your attitude while on the ILS. The flight directors system does this for you, you just keep the aircraft symbol aligned with the flight director bars and the aircraft will fly correctly. Your arms are just replacing the input of the autopilot but the system guides you. It just makes it easier to fly. If you want to fly completely manually, there is a switch to remove the bars so that they don't distract you. When the autopilot is on, the flight director bars show you what the autopilot is about to do, you may need to intervene if it's not correct. If the autopilot was inoperative, flying with the flight director system takes some of the work load off of the pilot instead of completely hand flying.